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I have set up a new company on quickbooks premier edition 2011/2012.  I input an invoice into the system and then allocated a payment to it through Receive payments.
However when I went to reconcile the bank statement it had the deposit in the right spot but there was also a corresponding entry in the cheques and payments column (LHS) for the amount of the invoice less the GSt (10%) component.
I am not sure why this is happening - it is happening to every invoice and subsequent payment I enter into the system. Please help this is doing my head in